Check the "TFN withheld", cannot be more than 50% of gross interest for each interest worksheet. 


Illustration: 

Gross: $4646.40'

TFN withheld: $3410.00

 These amounts cannot be lodged to ATO because TFN withheld cannot be more than 50% of gross interest for each interest worksheet. This is mandatory for ATO and cannot be avoided. 

You may call and confirm this with the ATO, ie why they provide such amounts.