Question: Non deductible expenses in Company Return.

The system is picking up the wrong super amount from the balance sheet in non-deductible expenses

Answer:  The Superannuation showing in the reconciliation is a payable and not an expense because (paid after 30 June). Since entry for this is 

Dr-Superannuation Expense and

Cr-Superannuation Payable 

There must be an expense showing in the Profit &Loss section.

Related guide: Unpaid Superannuation in the Reconciliation